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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
21
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
WGBS
4
pCHi-C
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
29
DNA accessibility
7
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
14
February, 2023
8
January, 2021
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
2
January, 2018
2
July, 2019
2
March, 2020
1
August, 2018
1
May, 2021
1
May, 2023
Available data
bam
625
bigWig
478
tsv
161
fastq
129
bed narrowPeak
82
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
99
Homo sapiens
Biosample type
49
tissue
38
in vitro differentiated cells
11
primary cell
1
cell line
1
stem cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
91
AMP
9
T1D
Genome assembly (visualization)
27
hg19
1
GRCh38
Lab
87
AMP-T2D consortium
9
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
peripheral blood mononuclear cell
8
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
cell line
GM12878
1
stem cell
mesenchymal stem cell
1
See all biosamples
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