Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
16
ATAC-seq
7
total RNA-seq
5
pCHi-C
4
WGBS
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
16
DNA accessibility
7
Transcription
5
DNA methylation
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
10
February, 2023
4
February, 2021
4
October, 2019
3
August, 2021
2
February, 2020
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
July, 2019
1
May, 2023
Available data
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
84
Homo sapiens
Biosample type
49
tissue
32
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
256
pancreas
210
kidney
205
epithelium
182
heart
108
liver
93
bone element
84
connective tissue
54
eye
49
adipose tissue
49
vasculature
48
blood vessel
40
brain
39
artery
38
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
83
AMP
2
T1D
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
81
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bam
bed bed3+
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
7
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
cardiac fibroblast
1
megakaryocyte
1
stem cell
mesenchymal stem cell
1
See all biosamples
Download