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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
47
WGBS
16
total RNA-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
RNA microarray
Assay category
69
DNA accessibility
53
DNA methylation
16
Transcription
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
220
fastq
154
tsv
139
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
155
Homo sapiens
Biosample type
127
primary cell
27
cell line
1
tissue
Organ
210
kidney
201
pancreas
155
epithelium
110
liver
106
heart
85
bone element
77
connective tissue
48
adipose tissue
42
brain
39
musculature of body
23
eye
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
115
HPAP
40
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
115
Klaus Kaestner, Upenn
34
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
bam
month_released!
February, 2023
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
RNA microarray
primary cell
pancreatic alpha cell
29
31
15
1
pancreatic beta cell
16
16
1
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
1
6
2
tissue
renal glomerulus
1
See all biosamples
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