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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
6
Hi-C
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
47
DNA methylation
6
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
294
bigWig
257
fastq
151
bed narrowPeak
151
tsv
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
19
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
1
tar
Organism
198
Homo sapiens
Biosample type
156
primary cell
28
cell line
15
tissue
Organ
255
pancreas
206
kidney
199
epithelium
138
heart
107
liver
93
bone element
89
connective tissue
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
38
brain
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
47
AMP
Genome assembly (visualization)
20
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
41
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
5
audit script error
files.file_type!
bam
month_released!
July, 2019
BIOSAMPLE
ASSAY
199 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
kidney glomerular epithelial cell
1
+ See 1 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
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