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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
8
snATAC-seq
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
90
DNA accessibility
55
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
8
January, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
January, 2018
1
November, 2019
Available data
bam
356
bigWig
317
fastq
205
bed narrowPeak
156
tsv
130
bigBed narrowPeak
80
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
215
Homo sapiens
Biosample type
172
primary cell
29
cell line
15
tissue
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
56
AMP
8
T1D
Genome assembly (visualization)
29
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
50
AMP-T2D consortium
8
Kyle Gaulton, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
snATAC-seq
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
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cell line
EndoC_BH1
18
1
6
2
1
GM12878
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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