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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
113
Transcription
81
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
130
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
3
December, 2019
2
March, 2020
1
July, 2019
Available data
161
bed narrowPeak
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
205
Homo sapiens
Biosample type
201
tissue
primary cell
4
cell line
Organ
205
kidney
141
heart
108
liver
105
pancreas
92
bone element
88
connective tissue
53
eye
49
adipose tissue
46
blood vessel
46
vasculature
43
epithelium
39
artery
39
brain
38
musculature of body
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
158
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
2
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
14
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
biosample_type!
primary cell
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
RRBS
tissue
kidney
75
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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