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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
2
October, 2019
Available data
183
bed narrowPeak
bam
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
210
Homo sapiens
Biosample type
201
tissue
5
primary cell
4
cell line
Organ
235
pancreas
210
kidney
193
epithelium
141
heart
93
bone element
83
connective tissue
75
liver
54
eye
49
vasculature
48
blood vessel
46
adipose tissue
39
artery
39
brain
25
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
163
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
19
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
210 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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