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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
23
August, 2017
18
August, 2021
1
November, 2017
Available data
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
42
Homo sapiens
Biosample type
23
tissue
19
cell line
Organ
51
connective tissue
42
liver
36
adipose tissue
22
brain
22
musculature of body
20
pancreas
4
gonad
4
ovary
2
eye
1
heart
1
limb
1
lymph node
Project
42
AMP
Genome assembly (visualization)
14
hg19
Lab
24
AMP-T2D consortium
18
Bing Ren, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
tissue
liver
23
cell line
HepG2
19
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