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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
2
total RNA-seq
1
ATAC-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
3
Transcription
2
DNA accessibility
1
DNA methylation
Date released
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
13
Homo sapiens
Biosample type
12
tissue
1
primary cell
Organ
237
pancreas
210
kidney
207
epithelium
142
heart
93
bone element
82
liver
54
eye
51
vasculature
50
blood vessel
43
brain
39
artery
37
connective tissue
20
lung
13
musculature of body
9
adipose tissue
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
13
AMP
Genome assembly (visualization)
5
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
month_released!
August, 2017
BIOSAMPLE
ASSAY
13 results
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Hi-C
total RNA-seq
ATAC-seq
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
gastrocnemius medialis
4
1
psoas muscle
2
1
skeletal muscle tissue
1
1
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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