Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
4
ChIP-seq
3
total RNA-seq
2
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
35
February, 2023
6
August, 2021
5
October, 2019
4
March, 2020
3
February, 2020
2
July, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
69
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
55
Homo sapiens
Biosample type
51
tissue
4
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
55
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
organ_slims!
esophagus
BIOSAMPLE
ASSAY
55 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
islet of Langerhans
4
pulmonary artery
2
ascending aorta
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
See all biosamples
Download