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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
7
ATAC-seq
6
ChIP-seq
2
RRBS
Assay category
8
3D chromatin structure
7
DNA accessibility
6
DNA binding
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
6
August, 2017
5
March, 2020
3
March, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
October, 2017
1
October, 2019
Available data
bam
607
bigWig
408
tsv
363
fastq
212
bed narrowPeak
89
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
14
tagAlign
7
hic
6
bedpe bed3+
5
bigBed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
23
Homo sapiens
Biosample type
16
tissue
4
cell line
3
primary cell
Organ
40
liver
28
epithelium
28
eye
26
connective tissue
23
pancreas
20
musculature of body
9
brain
6
heart
6
vasculature
5
adipose tissue
5
blood vessel
5
kidney
4
bone element
4
skeleton
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
20
AMP
3
HPAP
Genome assembly (visualization)
23
hg19
14
GRCh38
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bam
BIOSAMPLE
ASSAY
23 results
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Clear Filters
Hi-C
ATAC-seq
ChIP-seq
RRBS
tissue
islet of Langerhans
2
5
6
1
pancreas
1
1
cell line
EndoC_BH1
1
2
Panc1
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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