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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
67
total RNA-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
6
ChIP-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
98
DNA accessibility
67
Transcription
49
DNA methylation
9
3D chromatin structure
6
DNA binding
Target of assay
14
histone
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
8
March, 2020
7
August, 2020
6
August, 2017
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
481
bigWig
417
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
242
Homo sapiens
Biosample type
152
primary cell
62
tissue
29
cell line
Organ
243
pancreas
210
kidney
207
epithelium
141
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
20
lung
20
musculature of body
18
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
63
AMP
28
T1D
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
152
Klaus Kaestner, Upenn
47
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
ChIP-seq
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
12
7
4
3
6
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
1
2
1
Panc1
1
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