Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
ChIP-seq
Assay category
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
1
DNA binding
Target of assay
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
12
February, 2020
5
July, 2019
2
March, 2020
1
February, 2023
1
October, 2017
1
October, 2019
Available data
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
22
Homo sapiens
Biosample type
18
tissue
4
primary cell
Organ
243
pancreas
210
kidney
207
epithelium
141
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
20
lung
20
musculature of body
18
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
6
hg19
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
target.investigated_as!
histone
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
ChIP-seq
tissue
brain
1
1
1
Ammon's horn
1
1
amygdala
1
anterior cingulate cortex
1
caudate nucleus
1
+ See 10 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
Download