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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
164
histone
164
histone modification
84
broad histone mark
80
narrow histone mark
30
control
12
transcription factor
5
nucleotide modification
1
RNA binding protein
Date released
52
August, 2017
22
May, 2021
5
October, 2017
4
November, 2017
1
August, 2021
Available data
370
bigWig
363
bed narrowPeak
bam
235
bigBed narrowPeak
133
tagAlign
87
fastq
36
bed broadPeak
16
bigBed broadPeak
8
bed bed3+
Organism
84
Homo sapiens
Biosample type
61
tissue
22
primary cell
in vitro differentiated cells
1
cell line
Organ
20
adipose tissue
20
connective tissue
13
liver
12
musculature of body
9
brain
8
pancreas
Project
84
AMP
Genome assembly (visualization)
33
hg19
Lab
63
AMP-T2D consortium
20
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bam
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
20
liver
12
skeletal muscle tissue
12
islet of Langerhans
8
brain
5
+ See 2 more…
primary cell
CD8-positive, alpha-beta T cell
20
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
1
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