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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
4
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
October, 2017
4
July, 2019
2
March, 2020
1
February, 2023
Available data
231
bam
210
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
227
Homo sapiens
Biosample type
217
tissue
10
primary cell
Organ
585
liver
438
pancreas
302
epithelium
227
brain
176
connective tissue
157
heart
156
vasculature
152
blood vessel
151
kidney
97
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
20
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
227
AMP
Genome assembly (visualization)
173
GRCh38
127
hg19
Lab
227
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
assay_slims!
Transcription
BIOSAMPLE
ASSAY
227 results
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ChIP-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 68 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
See all biosamples
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