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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
pCHi-C
1
RRBS
Assay category
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
4
February, 2023
3
June, 2019
1
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
29
Homo sapiens
Biosample type
25
tissue
4
primary cell
Organ
765
pancreas
755
liver
636
connective tissue
479
adipose tissue
400
epithelium
276
heart
247
brain
201
kidney
177
vasculature
173
blood vessel
147
bone element
92
artery
78
limb
68
blood
68
bodily fluid
61
musculature of body
40
nerve
34
embryo
29
eye
23
spleen
20
lung
20
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
29
AMP-T2D consortium
files.file_type!
bed bed3+
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
29 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
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