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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
14
Transcription
Target of assay
10
histone
10
histone modification
7
narrow histone mark
6
control
3
broad histone mark
3
transcription factor
Date released
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
bed bed3+
Organism
34
Homo sapiens
Biosample type
26
in vitro differentiated cells
8
cell line
Organ
913
pancreas
778
liver
657
connective tissue
498
epithelium
485
adipose tissue
363
heart
269
kidney
251
brain
222
vasculature
218
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
19
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
34
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
assay_title!
DNAme array
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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