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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
26
total RNA-seq
18
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
32
DNA binding
27
Transcription
18
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
713
February, 2021
406
November, 2017
396
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
fastq
73
bam
72
bigWig
46
bed narrowPeak
26
tsv
14
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
csv
1
hic
Organism
78
Homo sapiens
Biosample type
73
primary cell
5
tissue
Organ
77
pancreas
61
epithelium
Project
78
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
73
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
32
missing controlled_by
files.file_type!
bed bed3+
assay_title!
DNAme array
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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tissue
islet of Langerhans
4
1
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