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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
60
Homo sapiens
Biosample type
48
tissue
12
primary cell
Organ
915
pancreas
770
liver
654
connective tissue
497
epithelium
482
adipose tissue
362
heart
272
kidney
247
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
60
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
37
hg19
18
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
assay_title!
small RNA-seq
month_released!
December, 2019
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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