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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
245
total RNA-seq
200
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
384
Transcription
276
DNA binding
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
563
bigWig
559
bam
361
fastq
295
bed narrowPeak
220
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1001
Homo sapiens
Biosample type
2436
tissue
1001
primary cell
659
cell line
369
in vitro differentiated cells
7
stem cell
Organ
352
epithelium
309
pancreas
29
vasculature
28
connective tissue
26
kidney
25
blood vessel
20
vein
13
brain
12
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
472
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
548
hg19
456
GRCh38
Lab
439
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
assay_title!
small RNA-seq
month_released!
July, 2018
BIOSAMPLE
ASSAY
1001 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
exocrine cell
39
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