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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
20
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
1
February, 2023
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
22
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
234
tissue
13
primary cell
Organ
915
pancreas
775
liver
654
connective tissue
503
epithelium
482
adipose tissue
362
heart
275
kidney
247
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
60
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
247
AMP
Genome assembly (visualization)
181
GRCh38
135
hg19
Lab
247
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
caudate nucleus
15
1
temporal lobe
15
1
+ See 72 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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