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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
40
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
82
DNA accessibility
40
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
289
August, 2017
276
October, 2019
240
August, 2021
217
May, 2021
173
May, 2022
168
February, 2021
151
May, 2020
120
May, 2019
108
February, 2023
80
April, 2019
79
December, 2017
79
November, 2018
74
October, 2018
60
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
106
bed narrowPeak
98
tsv
64
xls
34
bam
32
bigWig
24
tagAlign
8
txt
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
239
Homo sapiens
Biosample type
179
tissue
33
in vitro differentiated cells
27
cell line
1
primary cell
Organ
92
heart
81
kidney
23
liver
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
240
AMP
Genome assembly (visualization)
87
GRCh38
40
hg19
Lab
133
AMP-T2D consortium
79
Katalin Susztak, Upenn
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
240 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
osteoblast
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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