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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1778
ChIP-seq
1531
total RNA-seq
527
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
13
DNA accessibility
Date released
6
August, 2017
4
October, 2019
2
July, 2019
1
November, 2018
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
bed bed3+
14
fastq
1
tar
Organism
13
Homo sapiens
Biosample type
6
tissue
5
primary cell
1
cell line
1
in vitro differentiated cells
Organ
4
epithelium
4
kidney
3
pancreas
1
blood vessel
1
brain
1
connective tissue
1
liver
1
vasculature
1
vein
Project
13
AMP
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
13
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
13 results
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DNase-seq
FAIRE-seq
tissue
islet of Langerhans
1
1
frontal cortex
1
kidney
1
pancreas
1
right lobe of liver
1
primary cell
skeletal muscle myoblast
2
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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