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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1502
ChIP-seq
1286
total RNA-seq
327
ATAC-seq
176
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
WGBS
27
snATAC-seq
23
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
DNase-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
3D chromatin structure
Date released
9
March, 2020
4
July, 2019
3
August, 2021
3
October, 2019
2
November, 2019
1
December, 2018
1
March, 2019
Available data
17
hic
16
bedpe bed3+
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
23
Homo sapiens
Biosample type
16
tissue
primary cell
4
in vitro differentiated cells
3
cell line
Organ
6
musculature of body
5
pancreas
4
limb
3
heart
3
liver
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
23
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
files.file_type!
bed bed3+
biosample_type!
primary cell
BIOSAMPLE
ASSAY
23 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
EndoC_BH1
1
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