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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
57
ChIP-seq
Assay category
99
DNA accessibility
57
DNA binding
Target of assay
53
histone
53
histone modification
37
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
65
August, 2021
54
November, 2017
35
February, 2023
2
November, 2018
Available data
394
bam
350
fastq
198
tsv
179
bed narrowPeak
160
tagAlign
157
txt
153
zippedFastqFolder
113
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
156
Homo sapiens
Biosample type
151
tissue
4
cell line
1
in vitro differentiated cells
Organ
64
kidney
52
brain
35
artery
35
blood vessel
35
heart
35
vasculature
4
liver
Project
156
AMP
Genome assembly (visualization)
hg19
1357
GRCh38
Lab
92
AMP-T2D consortium
64
Katalin Susztak, Upenn
files.file_type!
bed bed3+
assembly!
hg19
BIOSAMPLE
ASSAY
156 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
substantia nigra
10
+ See 3 more…
cell line
HepG2
4
in vitro differentiated cells
neural progenitor cell
1
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