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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1719
ChIP-seq
1401
total RNA-seq
487
ATAC-seq
354
single cell RNA-seq
83
snATAC-seq
75
WGBS
46
pCHi-C
24
Hi-C
19
RRBS
18
small RNA-seq
8
DNase-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
DNA accessibility
Date released
5
August, 2017
3
October, 2019
Available data
205
bam
205
bed narrowPeak
205
bigBed narrowPeak
205
bigWig
202
bed broadPeak
202
bigBed broadPeak
bed bed3+
12
fastq
Organism
8
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
1
in vitro differentiated cells
Organ
3
epithelium
3
kidney
1
connective tissue
1
liver
1
pancreas
Project
8
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
8
AMP-T2D consortium
files.file_type!
bed bed3+
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
8 results
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DNase-seq
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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