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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
25
histone
25
histone modification
16
transcription factor
15
narrow histone mark
10
broad histone mark
8
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
12
August, 2017
5
December, 2017
3
November, 2018
2
February, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
41
Homo sapiens
Biosample type
21
cell line
9
in vitro differentiated cells
6
tissue
5
primary cell
Organ
22
liver
9
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
41
AMP
Genome assembly (visualization)
41
hg19
38
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
41
inconsistent control read length
3
inconsistent assembly
3
inconsistent control run_type
files.file_type!
bed bed3+
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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