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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
24
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
424
DNA binding
29
DNA accessibility
Target of assay
340
transcription factor
81
recombinant protein
79
histone
79
histone modification
73
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
27
December, 2018
23
June, 2019
20
August, 2017
20
October, 2019
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
453
Homo sapiens
Biosample type
tissue
354
cell line
82
primary cell
17
in vitro differentiated cells
Organ
307
liver
60
epithelium
54
blood
54
bodily fluid
28
pancreas
15
vasculature
13
blood vessel
12
connective tissue
11
vein
8
musculature of body
7
kidney
6
brain
3
heart
2
eye
Project
453
AMP
Genome assembly (visualization)
449
hg19
415
GRCh38
Lab
453
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bed bed3+
biosample_type!
tissue
BIOSAMPLE
ASSAY
453 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
2
1
See all biosamples
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