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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
40
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
357
May, 2021
324
November, 2017
168
February, 2021
148
May, 2020
134
May, 2022
120
August, 2017
106
February, 2023
85
August, 2021
73
September, 2018
68
October, 2019
62
November, 2018
59
September, 2020
48
July, 2018
43
April, 2018
39
February, 2018
31
December, 2017
31
June, 2019
28
December, 2018
27
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
11
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
49
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
24
tsv
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
85
Homo sapiens
Biosample type
tissue
44
cell line
40
in vitro differentiated cells
1
primary cell
Organ
32
liver
8
embryo
3
epithelium
2
connective tissue
2
kidney
2
pancreas
Project
85
AMP
Genome assembly (visualization)
54
hg19
38
GRCh38
Lab
49
AMP-T2D consortium
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
biosample_type!
tissue
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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