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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
119
ChIP-seq
38
ATAC-seq
5
pCHi-C
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
138
Transcription
119
DNA binding
38
DNA accessibility
4
3D chromatin structure
Target of assay
67
histone
67
histone modification
35
narrow histone mark
32
broad histone mark
27
transcription factor
25
control
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
40
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
237
bam
207
bigWig
131
tsv
89
bed narrowPeak
83
fastq
26
tagAlign
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
304
Homo sapiens
Biosample type
2314
tissue
992
primary cell
659
cell line
304
in vitro differentiated cells
6
stem cell
Organ
25
embryo
24
epithelium
23
connective tissue
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
304
AMP
Genome assembly (visualization)
230
hg19
204
GRCh38
Lab
252
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
bed bed3+
assay_title!
GRO-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
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