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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
101
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
57
histone
57
histone modification
29
narrow histone mark
27
broad histone mark
27
transcription factor
17
control
6
RNA binding protein
3
chromatin remodeller
Date released
47
August, 2017
39
February, 2018
31
December, 2017
4
January, 2018
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
122
Homo sapiens
Biosample type
427
cell line
primary cell
340
tissue
122
in vitro differentiated cells
1
stem cell
Organ
48
connective tissue
24
embryo
19
epithelium
15
liver
1
adipose tissue
Project
122
AMP
Genome assembly (visualization)
99
GRCh38
99
hg19
4
hg18
Lab
122
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
biosample_type!
primary cell
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
46
1
pancreatic endoderm
15
4
1
hepatocyte
15
definitive endodermal cell
5
2
1
primitive gut cell
5
2
1
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