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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
83
ChIP-seq
17
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
138
Transcription
83
DNA binding
17
DNA accessibility
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
127
May, 2021
26
February, 2021
24
August, 2017
23
February, 2018
15
August, 2021
10
February, 2023
8
March, 2020
6
October, 2019
5
December, 2017
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
251
Homo sapiens
Biosample type
1776
tissue
786
primary cell
256
cell line
251
in vitro differentiated cells
7
stem cell
Organ
45
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
251
AMP
Genome assembly (visualization)
155
hg19
132
GRCh38
4
hg18
Lab
203
AMP-T2D consortium
47
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
100
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
files.file_type!
bed bed3+
bed narrowPeak
BIOSAMPLE
ASSAY
251 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
5
1
adipocyte
5
24
6
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
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