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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
127
ChIP-seq
38
ATAC-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
127
DNA binding
39
DNA accessibility
4
3D chromatin structure
Target of assay
104
histone
104
histone modification
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
41
August, 2017
33
August, 2021
31
February, 2018
26
February, 2021
24
December, 2017
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
315
Homo sapiens
Biosample type
2275
tissue
930
primary cell
640
cell line
315
in vitro differentiated cells
7
stem cell
Organ
64
connective tissue
23
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
315
AMP
Genome assembly (visualization)
238
hg19
213
GRCh38
4
hg18
Lab
273
AMP-T2D consortium
37
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
8
inconsistent control read length
files.file_type!
bed bed3+
ibed
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
315 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
40
7
1
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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