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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
127
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
DNA binding
127
Transcription
18
DNA accessibility
Target of assay
71
histone
71
histone modification
37
narrow histone mark
33
broad histone mark
31
transcription factor
25
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
47
August, 2017
39
February, 2018
37
August, 2021
31
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
1703
tissue
581
cell line
578
primary cell
272
in vitro differentiated cells
Organ
52
connective tissue
25
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
272
AMP
Genome assembly (visualization)
246
GRCh38
245
hg19
Lab
272
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
46
4
1
neural progenitor cell
20
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
15
4
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