Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
121
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
121
DNA binding
18
DNA accessibility
Target of assay
70
histone
70
histone modification
36
narrow histone mark
33
broad histone mark
26
transcription factor
25
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
42
August, 2017
39
February, 2018
37
August, 2021
30
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
266
Homo sapiens
Biosample type
1692
tissue
568
cell line
534
primary cell
266
in vitro differentiated cells
Organ
47
connective tissue
24
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
266
AMP
Genome assembly (visualization)
241
GRCh38
240
hg19
Lab
266
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
266 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
41
1
neural progenitor cell
7
20
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
14
+ See 24 more…
See all biosamples
Download