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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
121
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
123
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
43
narrow histone mark
43
transcription factor
24
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
61
August, 2017
40
August, 2021
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
330
Homo sapiens
Biosample type
2532
tissue
1051
primary cell
659
cell line
330
in vitro differentiated cells
7
stem cell
Organ
84
connective tissue
24
epithelium
15
liver
13
embryo
3
pancreas
1
adipose tissue
1
heart
Project
330
AMP
Genome assembly (visualization)
241
hg19
215
GRCh38
4
hg18
Lab
278
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
bed bed3+
month_released!
February, 2018
BIOSAMPLE
ASSAY
330 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
7
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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