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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
136
total RNA-seq
38
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
179
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
61
August, 2017
40
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
291
bam
259
bigWig
140
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
368
Homo sapiens
Biosample type
2050
tissue
1049
primary cell
659
cell line
368
in vitro differentiated cells
7
stem cell
Organ
84
connective tissue
26
embryo
24
epithelium
15
liver
3
pancreas
adipose tissue
1
heart
Project
368
AMP
Genome assembly (visualization)
272
hg19
246
GRCh38
4
hg18
Lab
316
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
368 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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