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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
168
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
RNA binding protein
3
chromatin remodeller
Date released
122
May, 2021
56
August, 2017
39
February, 2018
29
December, 2017
28
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
267
bam
240
bigWig
134
fastq
131
tsv
104
bed narrowPeak
40
tagAlign
bed bed3+
12
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
319
Homo sapiens
Biosample type
2253
tissue
780
primary cell
564
cell line
319
in vitro differentiated cells
7
stem cell
Organ
66
connective tissue
26
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
319
AMP
Genome assembly (visualization)
227
hg19
222
GRCh38
4
hg18
Lab
282
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
target.investigated_as!
RNA binding protein
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
319 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
56
5
embryonic stem cell
35
7
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
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