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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
839
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
839
DNA binding
Target of assay
581
histone modification
580
histone
303
narrow histone mark
277
broad histone mark
182
control
76
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
150
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
4
September, 2017
2
March, 2020
Available data
722
bam
575
bigWig
555
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
bed bed3+
1
tagAlign bed3+
Organism
832
Homo sapiens
Biosample type
839
tissue
484
cell line
276
primary cell
179
in vitro differentiated cells
Organ
209
brain
152
liver
96
pancreas
83
heart
73
blood vessel
73
vasculature
70
connective tissue
69
adipose tissue
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
837
AMP
2
T1D
Genome assembly (visualization)
522
GRCh38
501
hg19
Lab
839
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
839 results
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Clear Filters
ChIP-seq
tissue
liver
142
islet of Langerhans
50
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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