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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
522
ChIP-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
1
DNase-seq
Assay category
918
Transcription
522
DNA binding
159
DNA accessibility
16
DNA methylation
Target of assay
447
histone modification
446
histone
230
narrow histone mark
216
broad histone mark
75
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
157
October, 2019
132
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
14
October, 2017
13
November, 2018
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
Available data
1703
bam
1672
bigWig
917
tsv
843
bed narrowPeak
555
bigBed narrowPeak
280
fastq
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1609
Homo sapiens
Biosample type
1615
tissue
506
primary cell
462
cell line
246
in vitro differentiated cells
Organ
474
connective tissue
416
adipose tissue
359
pancreas
232
liver
176
brain
124
heart
100
blood vessel
100
vasculature
97
kidney
66
bone element
60
limb
58
artery
29
nerve
15
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1613
AMP
2
T1D
Genome assembly (visualization)
1615
GRCh38
1566
hg19
Lab
1537
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1615 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
4
22
1
liver
147
72
1
kidney
20
75
bone tissue
58
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