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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
556
ChIP-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
1
DNase-seq
Assay category
918
Transcription
556
DNA binding
159
DNA accessibility
16
DNA methylation
Target of assay
476
histone modification
475
histone
243
narrow histone mark
232
broad histone mark
80
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
157
October, 2019
126
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
14
October, 2017
13
November, 2018
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
Available data
1706
bigWig
1697
bam
917
tsv
877
bed narrowPeak
549
bigBed narrowPeak
274
fastq
bed bed3+
185
bed broadPeak
176
bigBed broadPeak
110
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1649
Homo sapiens
Biosample type
1649
tissue
506
primary cell
462
cell line
246
in vitro differentiated cells
Organ
474
connective tissue
416
adipose tissue
353
pancreas
232
liver
176
brain
164
heart
100
blood vessel
100
vasculature
97
kidney
66
bone element
60
limb
58
artery
29
nerve
15
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1647
AMP
2
T1D
Genome assembly (visualization)
1649
GRCh38
1560
hg19
Lab
1531
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1649 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
DNase-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
4
22
6
1
liver
147
72
1
kidney
20
75
bone tissue
58
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