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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
647
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
1124
Transcription
647
DNA binding
261
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
519
histone
519
histone modification
281
narrow histone mark
238
broad histone mark
120
control
10
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
238
October, 2019
229
August, 2021
193
May, 2020
118
July, 2018
115
May, 2019
109
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
41
May, 2022
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2190
Homo sapiens
Biosample type
2192
tissue
642
primary cell
247
in vitro differentiated cells
232
cell line
6
stem cell
Organ
503
connective tissue
444
adipose tissue
288
pancreas
278
liver
246
heart
231
kidney
228
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
47
musculature of body
41
nerve
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2095
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1372
GRCh38
1309
hg19
Lab
1906
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
8
audit script error
files.file_type!
bed bed3+
fastq
BIOSAMPLE
ASSAY
2192 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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