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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
11
snATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
479
Transcription
197
DNA binding
166
DNA accessibility
47
DNA methylation
8
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
October, 2019
3
September, 2020
1
August, 2022
1
November, 2018
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
166
Homo sapiens
Biosample type
76
tissue
71
primary cell
19
cell line
Organ
166
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
96
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
74
hg19
60
GRCh38
Lab
73
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3+
bed bedMethyl
BIOSAMPLE
ASSAY
166 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
58
7
1
1
pancreas
4
1
body of pancreas
4
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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