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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
Assay category
17
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
2
August, 2021
November, 2019
1
March, 2019
Available data
3147
bam
2942
bigWig
1692
bed narrowPeak
1476
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
bed bed3+
161
txt
64
xls
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
2
primary cell
1
cell line
Organ
3
blood vessel
3
heart
3
vasculature
2
epithelium
2
liver
2
musculature of body
2
pancreas
2
vein
1
kidney
Project
17
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3+
bed bedMethyl
month_released!
November, 2019
BIOSAMPLE
ASSAY
17 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
cell line
HepG2
1
See all biosamples
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