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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
209
DNA binding
21
Transcription
5
DNA accessibility
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
16
October, 2017
12
February, 2020
10
July, 2019
2
March, 2020
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
237
Homo sapiens
Biosample type
237
tissue
primary cell
Organ
768
liver
624
connective tissue
565
pancreas
481
adipose tissue
346
heart
249
kidney
237
brain
193
blood vessel
193
vasculature
158
bone element
135
artery
118
epithelium
85
limb
61
blood
61
bodily fluid
53
eye
46
musculature of body
41
nerve
34
embryo
22
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
237
AMP
Genome assembly (visualization)
176
GRCh38
125
hg19
Lab
237
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3+
bed bedMethyl
biosample_type!
primary cell
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
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