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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
911
pancreas
775
liver
654
connective tissue
497
epithelium
483
adipose tissue
315
heart
272
kidney
249
brain
221
vasculature
218
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
34
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
files.file_type!
bed bed3+
bed bedMethyl
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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