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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
6
ATAC-seq
4
Hi-C
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
66
Transcription
34
DNA methylation
9
DNA accessibility
4
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
199
May, 2022
198
February, 2023
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
169
bam
165
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
183
Homo sapiens
Biosample type
94
tissue
61
cell line
28
primary cell
Organ
59
liver
25
heart
17
connective tissue
15
blood
15
bodily fluid
15
brain
12
adipose tissue
11
epithelium
11
kidney
11
pancreas
10
musculature of body
10
vasculature
9
blood vessel
8
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
183
AMP
Genome assembly (visualization)
149
GRCh38
149
hg19
Lab
183
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
bed bedgraph
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
spleen
6
2
liver
4
2
1
body of pancreas
2
2
2
omental fat pad
4
1
+ See 27 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 17 more…
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