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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
12
Transcription
3
DNA accessibility
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
25
May, 2019
13
July, 2019
7
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
187
Homo sapiens
Biosample type
175
tissue
12
primary cell
Organ
611
liver
596
pancreas
551
connective tissue
419
adipose tissue
280
epithelium
194
heart
187
brain
142
vasculature
139
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
35
musculature of body
29
nerve
27
embryo
15
spleen
13
vein
2
eye
1
pericardium
1
pituitary gland
Project
187
AMP
Genome assembly (visualization)
182
GRCh38
134
hg19
Lab
187
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
bed bed3+
bed bedgraph
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 65 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
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