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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
9
histone
9
histone modification
7
narrow histone mark
6
transcription factor
2
broad histone mark
2
chromatin remodeller
Date released
6
August, 2017
5
December, 2017
2
February, 2018
2
November, 2017
Available data
56
bam
56
bigWig
56
fastq
54
bed narrowPeak
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
bed bed3+
Organism
15
Homo sapiens
Biosample type
9
in vitro differentiated cells
4
primary cell
2
cell line
Organ
5
epithelium
4
pancreas
2
connective tissue
2
embryo
2
liver
Project
15
AMP
Genome assembly (visualization)
15
hg19
13
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
15
inconsistent control read length
files.file_type!
bed bed3+
bigBed narrowPeak
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
cell line
HepG2
2
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