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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
Hi-C
Assay category
1545
Transcription
971
DNA binding
530
DNA accessibility
76
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
10
March, 2020
4
July, 2019
4
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
23
hic
20
bedpe bed3+
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
fastq
Organism
28
Homo sapiens
Biosample type
16
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
vasculature
2
liver
2
vein
1
kidney
Project
24
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
20
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
files.file_type!
bed bed3+
fastq
BIOSAMPLE
ASSAY
28 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
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